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Darwin and deduction

Almost two hundred years after the father of evolution was born, the implications of his ideas are still being recognized.


[Published 9th May 2008 04:45 PM GMT]


One of the most remarkable but insufficiently noted features of Charles Darwin's conception of evolution is that its logical implications are still being worked out. I am not merely claiming that experimental and observation studies continue to make use of and bear on Darwinian ideas and principles. I am calling attention to the fact that after almost a century and a half, new deductions are still being teased out of his very fertile axioms of descent with modification and natural selection.

Neil S. Greenspan
The apparent simplicity of the phrase "survival of the fittest" (which was coined by Herbert Spencer and was not used in the early editions of Darwin's On the Origin of Species) hides more than it reveals. Far from being tautological, the underlying insight has vast implications that have, in some instances, taken so long to realize because of the series of logical steps required for their derivation. Even some of the more readily derivable conclusions have escaped relatively informed and sophisticated individuals.

Consider the admission, within the past six months, by the Harvard psychology professor and evolution advocate, Steve Pinker. On the web site edge.org, Pinker revealed that he only recently came to accept that human evolution did not stop thousands of years ago. It is welcome news that Pinker has reached this understanding, but it is a bit surprising that he would have entertained his prior view at all. Highly persuasive evidence, which did not in fact exist, should have been necessary to conclude that human evolution had reached a standstill.

If organisms of any species harbor phenotypic variations that are capable of being inherited, and these phenotypic variations influence the numbers of descendants an organism is likely to leave, then the distribution of phenotypes (and genotypes) in the population will very likely change over time. In other words, the population will evolve. Thus, heritable variation that influences reproductive success is necessary and sufficient for evolution to occur unless the selective "forces" acting on the population happen to be perfectly balanced, which is highly unlikely. So the continuation of human evolution should be anyone's default assumption given that, as Pinker might have known, humans exhibit substantial genetic variation that could plausibly influence reproductive success.

In fact, there are numerous experimental reports on the allelic diversity at individual human genetic loci, as well as studies offering evidence of selection for or against alleles at particular loci, such as the lactase and Duffy blood group loci. Furthermore, recent studies designed to exploit the vast number of genetic markers now defined for the human genome, along with relatively new and sophisticated methods to detect selection, have provided evidence of selection at numerous human loci, and have, in one case, suggested that the pace of human evolution has accelerated in the past 40,000 years, in parallel with greater population size.

Darwin's connection to deductive reasoning has other notable aspects. On reading his famous tome some years ago I was struck by the overwhelming evidence of his formidable logical powers. Others have preferred to see Darwin's achievement more in inductive terms, but Darwin clearly worked out the deductive consequences of his concept of natural selection for numerous features of the living world, such as the spatial and temporal distributions of organisms and species. For instance, Darwin presciently saw the implications of competitive mechanisms for inter-species relations such that fluctuations in the numbers of one species might influence the numbers of a second species with which there are no direct interactions. He specifically suggested, for example, that the number of felines in an area might ultimately affect the frequency of a particular flower, of no significance to the felines, by virtue of a chain of influences: felines on mice, mice on bees, and bees on flowers.

Darwin, who I think can reasonably be regarded as the greatest applied logician since Euclid, introduced into biology the notion of categories for which membership was not all-or-none. Categories with absolute criteria for inclusion had been the norm in mathematics and logic for two millennia, but with Darwin's emphasis on evolving lineages, the intellectual community was given a powerful new tool. Thus, two humans (or members of any other species) do not have to share an identical list of attributes to qualify for membership in the species. Only some attributes (and a variable subset at that) must be shared.

Astonishingly, even today, many who regard themselves as Darwinians (or
neo-Darwinians) continue to construct and use biological categories that have more in common with those of ancient Greek thought than of Darwin's. For example, in my own field of immunology, it is common to distinguish between putatively innate and putatively adaptive immune mechanisms as if there were an absolutely obvious boundary between the two. Yet the actual mechanisms show little respect for this distinction, as when antibodies (adaptive) mediate immunity by interacting with phagocytes (innate). One of the most dramatic examples of the limitations of rigid categories in biology is the very notion of "species," for which there is still neither a consensus definition nor one that applies equally well to all types of organisms. Perhaps that is why the eminent population geneticist and evolutionary biologist, Richard Lewontin, once remarked that "Biology remains in many ways obdurately Platonic."

Neil Greenspan
mail@the-scientist.com

Neil Greenspan is a professor of pathology at the Case Western Reserve University School of Medicine. His research, clinical, and teaching interests relate to immunology and allied fields and are informed by his study of evolution. Greenspan and about fifteen Case faculty colleagues have organized a Celebration of Darwin and Evolution spanning the 2008-2009 academic year. Details can be found at: www.case.edu/darwin/.


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Your "PS" like all your posts was irrelevant
by anonymous poster

[Comment posted 2008-05-18 11:34:13]
When people add a post script, it's because they want to add something important. In your case, it was just more garbage.

Dear Ruth Lamarck;
Surgery has nothing to do with heridity.




Ms. Obvious strikes again
by anonymous poster

[Comment posted 2008-05-18 11:29:35]
You wrote: “Heritable traits as such, do not exist at all!”; and you seemed to get very excited about this lie. You continue to persist in your stupidity; what you suggest is not biology, for multicellular organisms it would be magic. Your tautologies are tiring and boring. Again you give us triviality; we all know that for an organism to develop it must …. Wait for it… wait … DEVELOP. Ruth how did you ever achieve such deep insight into the obvious?



P.S. to my latest comment
by Ruth Rosin

[Comment posted 2008-05-15 14:02:41]
Various types of medical treatments, by use of medications, massage,or surgery, actually alter the environment in which a human patient lives. Except that such alterations are deliberately made by medical doctors, and more often than not, involve changes that usually do not occur naturally. Surgery, of course, alters the internal environment, but this is actually true for all environmental factors that affect a living organism. External environmental factors can have an effect only if they penetrate an organism, even if they start by affecting only the skin layer.



Response to latest comment by Kroening
by Ruth Rosin

[Comment posted 2008-05-14 22:10:53]
When I speak of development, I do not speak only of the environment.

All I said is that in order to develop individual traits which an organism does not have when it starts life as an individual organism, the organism has to develop, and this development invariably occurs under inseparable effects of both genes & environment, (plus the inseparable effects of that which already exists at each point along this developmental process).

So when you deal with development, you can never ignore the environment. The two are inextricably related, but, by no means are they identical. Development is a process. The environment invariably plays a role in this process, and the role it plays is inseparable from the role played by genes, and the role played by everything that the organism already has.



I see
by DUBEAR KROENING

[Comment posted 2008-05-14 15:58:50]
Hi Ruth,

OK, I see what you are talking about now. Of course an organism would normally have to develop to express a phenotype (although not necessarily in the case of some lethal alleles, but I'm not going to get picky). So the albinism trait isn't going to be expressed unless the organism develops, so perhaps by environment you are talking about development, is that correct? I do agree that the environment can play an important role in many phenotypes, and certainly development would play an important role in the expression of any phenotype associated with an organism after it is born! :) Thank you for expanding on your thoughts, I understand better now. Smile and enjoy conversing!!



!!! !!! !!! !!!
by anonymous poster

[Comment posted 2008-05-14 15:20:22]
What you've said is wrong no matter how you parse it. Nothing in the environment will change the blood cells of someone with sickle cell anemia, or any of the hundreds of other traits directly linked to genetics and which are independent of any environment. But tell us Ruth, which environmental factors would prevent a someone homozygous for Hs from having SCA?

The simple fact is that you are wrong; you cannot have sickle cell disease without the two copies of the gene - one from each parent.

Genetics proves you wrong; my beautiful hazel/green eyes prove you wrong; my purebred dogs proves you wrong. Luckily for us, the neolithic people who pioneered agriculture figured out something that you still haven't grasped. You are just wrong.

You persist in your trivialities and fail to put forth a convincing argument, or (even better) research to support your fantastical thesis that there is no such thing as inherited traits.

It's clear you know nothing about biology, you likely read something about epigenetics but never understood it.



P.S. to: Response to Kroening
by Ruth Rosin

[Comment posted 2008-05-14 13:28:37]
What I said in that response can be stated in very short shrift as follows:

The finding that specific genes are essential for the development of a specific trait, (including a specific disease), in a specific organism, does not mean that the presence of those genes is also sufficient for the development of that specific trait.

All individual traits develop in the individual organism under inseparable (!) effects of both (!) genes & environment, (plus the inseparable effects of that which already exists at each developmental stage). In other words, the presence of the essential genes is never also sufficient.

Except that such a brief statement would have been very difficult to understand without the far more detailed explanation I provided.

The point is that during individual development "essential" genes are never also "sufficient" for the development of a specific trait. For such a trait to develop you need the the "essential" genes PLUS the "essential" environment, (whose effects are inseparable from the effects of the genes, because the SAME genes can function differently in DIFFERENT environments, and the same environment can DIFFERENTLY affect the functioning of DIFFERENT genes).



Reply to DUBEAR KROENING
by Ruth Rosin

[Comment posted 2008-05-14 02:55:49]
It is, of course, incorrect to say that nothing is inherited. Most individual organisms, (though by no means all), start individual life as a one-celled fertilized egg; which means that they inherit everything that already exists in the fertilized egg, that is quite a complex combination of structures. Various forms of asexual reproduction can, of course, provide far more complex situations. For instance, in the case of a sea-anemone that divides into two, to produce two daughters, each daughter already has most of what a complete adult anemone has. But all individual development that occurs after individual life begins, occurs under inseparable effects of both genes & environment (plus inseparable effects of that which already exists at each developmental stage, (if you can at all justifiably speak of stages, in what is actually a continuous developmental process).

Medical experts often refer to specific diseases as "hereditary", or genetic diseases, when they know which genes are essential for the disease to develop. But it is misleading to assume that the terms mean that the disease develops without any effects of the environment. This is what I mean!

A fertilized human egg never has cystic fibrosis, (nor any other disease that can develop in humans only at a later stage). To develop such a disease, the fertilized egg must, (among others), develop all the organs that show the symptoms of the disease, and all these organs can never develop without an effect of proper environmental conditions, which may differ from one stage to another.(A human embryo does not need to breath, be fed, or cleaned. But a new-born child certainly needs all that. And so on.) So you can never exclude the effects of the environment, and assume that a "hereditary" disease can develop without any environmental effects.

Apart from all that, who knows? Maybe medical experts will one day discover environmental conditions that, when applied for a long period, even briefly, would prevent the symptoms of cystic fibrosis from developing even in a child who has two genes for the disease. Wouldn't that be great! After all, the symptoms of phenyl ketonuria can be easily avoided by avoiding specific foods. Also, if you isolate genes and keep them in a test-tube, they will do nothing. They need the internal environment of a living cell in order to function, and that internal environment cannot develop without any effects if the external



You've tried 4 times and failed 4
by anonymous poster

[Comment posted 2008-05-13 21:56:56]
Your frozen egg analogy is simply idiotic- I was being polite when I initially called it trivially obvious. It is tremendously stupid for you to argue that by freezing the egg you are demonstrating that traits are not heritable. I?ve head a lot of moronic arguments from creationists, yours ranks among the best of the worst. At least you can be proud that when it comes to ignorance you?ve reached depths undreamt of by your creationist peers. Besides the egg already inherited the biochemistry from it?s parents. Even if it never fully develops we can examine it, and because the traits are predictable thanks to heredity, characterize the egg with uncanny precision.

I base my explanation of honeybees on published research; unlike yours, which is based on ignorance.

Frankly, you must be a major dolt to post your delusions here without researching for the studies that refute them.



Heredity
by DUBEAR KROENING

[Comment posted 2008-05-13 18:55:52]
Hi Ruth,

You state that nothing is inherited, if I understand you correctly. So, if your child receives two bad copies of the cystic fibrosis allele, then they will have cystic fibrosis, no matter what the environment, right? Isn't that considered heredity? Maybe I'm not sure what you are trying to say...



Rebuttal to latest comment from anonymous poster
by Ruth Rosin

[Comment posted 2008-05-13 18:33:30]
My argument based on the frozen eggs remains perfectly valid even if you delete the exclamation marks. I used the exclamation marks only because I (erroneously) believed you might suffer from an attention deficit disorder.

If you do not understand that the frozen eggs example leads to the logically inevitable conclusion that the ability of the egg to develop all those traits that you consider "heritable" depends, among others, on inseparable effects of the genes, and the temperature, which is an environmental factor, your problem is obviously much more serious than a mere attention deficit.

I have no idea how you can compare a dead egg to a frozen egg, which is very much alive. I have no idea what makes you believe that the traits of honeybee males & females come from the queen. I have no idea why you are obsessed with religion, and with creationists. And I do not wish to know the explanation to any of these problems you obviously have.

I tried to explain to you a few very elementary things about biology. I did not know at the time that you were a lost case. But I know it now! And I shall never waste any more of my time trying to explain anything to you ever again!

Had I known that your arrogance only fully matches your ignorance, I would not have bothered in the first place.



Argument by exclamation marks
by anonymous poster

[Comment posted 2008-05-13 17:02:19]
Exclamation marks don?t make you right! Not even if you triple them!!!

You make another shallow argument by trying to make a distinction between freezing and killing it ? in both cases all biochemical activity ceases. You?ve yet to present anything substantive that supports your inane assertions. Now you?ve graduated from the trivially obvious to the irrelevant.

Your ignorance of biology runs very deep indeed. Creationists should really research their arguments beyond the websites of the usual suspects; this example of the bee seems so familiar that I suspect it?s lifted from one of those websites. It is nonetheless wrong.

Your very example refutes you ? it shows that traits are indeed heritable and that all the offspring male and female inherit their traits from the queen bee. It seems by your example that that you don?t really understand what inheritance means.

Finally, the workers are not ?manipulating the environment?, the queen manipulates the workers through her pheromones. The absence/reduction in pheromone triggers the workers to select a new queen.

Here are new interrelated concepts to learn: epigenetics, DNA methylation

BTW that?s 3 for 3 in your failure to show that heritable traits do not exist. I suggest you get a bachelors in biology before you go for number 4.



Rebuttal to 2 latest comments from anonymous poster.
by Ruth Rosin

[Comment posted 2008-05-13 13:29:45]
I am right, and you are wrong!

Indeed, I could have killed the zygote, but I deliberately avoided using such a drastic case. I could also have pointed out to you that honeybee queens and workers are all females that develop from fertilized eggs. A queen differs considerably from a worker, (in morphology, anatomy, physiology, and behavior), to the point where you can distinguish between them with one very quick glance. But, when the colony needs a new queen, (because the old one died, or stopped laying eggs), the workers can "manipulate" the environmental conditions to the point of causing one and the same egg, (or very young female larva), that would have otherwise developed into a worker, to develop into a queen!

My argument is trivial only in the sense that it is self-evident, but it is anything but shallow!!! In fact, it is so self-evident, that many, (like you), completely overlook it, just because it is too obvious.

Your problem is that you do not realize the overly obvious, i.e. that learning is just one of many different ways in which the environment can affect ontogeny, (of course invariably, and inseparably from the effects of the genes).



Correction
by anonymous poster

[Comment posted 2008-05-13 05:23:02]
Resident of Lineland; Flatland is giving your arguments more dimension that they have.



Trivially correct
by anonymous poster

[Comment posted 2008-05-13 05:19:02]
Thank you Ms. Blantantly Obvious, nobody would have figured out that a zygote will not develop if you freeze it ? you get zero points for the trivially obvious. Perhaps you?d like to surprise us with another well known biological fact; like if you kill an organism it is no longer living. Your thinking is so shallow I?m thinking you are a resident of Flatland. That?s two attempts and no evidence that your ridiculous assertion holds any water.



Rebuttal to anonymous poster
by Ruth Rosin

[Comment posted 2008-05-13 04:49:52]
Religion has absolutely nothing to do with it! What you need, instead, is to just consider a few well-known biological facts.

For instance, you can freeze a one-celled fertilized egg, (human, or otherwise), or an egg that has already undergone very few cell-divisions, and irrespective of all the hereditary material it contains, it will never develop any of the individual traits that you label "heritable". To develop any (!) such traits the egg requires, among others (!), a specific, very narrow, temperature-range; which is an environmental factor (!). Moreover, the effects of that environmental factor are inseparable (!) from the effects of the heritable material the egg contains. This is obvious (!) because fertilized eggs of different species may require a very different temperature-range to continue their development.

Mendel never tried anything like that!



Mendel proves you wrong.
by anonymous poster

[Comment posted 2008-05-12 18:49:59]
Wow! It is incredible what people will claim in defense of their religious ideas. I wonder which study has convinced Ruth that heritable traits do not exist?



Heritable traits?
by Ruth Rosin

[Comment posted 2008-05-10 08:52:27]
Heritable traits as such, do not exist at all! All individual traits develop ontogenetically, (in the individual organism), under inseparable (!) effects of both (!) genes & environment; except that some individual traits, (like Greenspan's phagocytes), develop much earlier than others.



Still biological
by anonymous poster

[Comment posted 2008-05-09 21:23:51]
Brad Andresen (comment) is correct to suggest that contemporary human evolution is a special case, but wrong to suggest that it is no longer truly ?biological natural selection?. Many years ago, Theodosius Dobzhansky (in ?Mankind Evolving?) pointed out that, in a culture where values and technology are all focused on sustaining the survival of individuals at all costs, human evolution is increasingly driven by heritable differences in reproductive efficiency rather differences in survival per se. Dobzhansky was aware of some of the paradoxes embedded in this notion. For example, to the extent that reproductive success correlates negatively with education, educational attainment correlates with intelligence, and intelligence is heritable, in this cultural milieu intelligence will be selected against. More bizarre scenarios can be imagined: to the extent that reproductive success correlates negatively with economic success (as suggested by both Dobzhanasky and Andresen), and economic success correlates with being raised to maturity by two living parents, this cultural milieu would seem to favor the evolution of a shortened life-span, for example on account of increased susceptibility to catastrophic diseases of middle age. Complex perhaps, but still biological.



Yet more CRD deductions: Tangled Bank & biological networks
by DENNIS HOLLENBERG

[Comment posted 2008-05-09 19:52:46]
We are indebted to Professor Greenspan for refreshing our insight into CRD's (Darwin's) estimable breadth of view. But there is another jewel that, in my view, provides us with the nascent insight that is key to much of our confusion about life and its processes.

In _... Origin ..._, CRD writes about what we now call ecological networks: "It is interesting to contemplate a tangled bank, clothed with many plants of many kinds, with birds singing on the bushes, with various insects flitting about, and with worms crawling through the damp earth, and to reflect that these elaborately constructed forms, so different from each other, and dependent upon each other in so complex a manner, have all been produced by laws acting around us." Crucially, what we tend to forget is that every process in/within living systems occurs in a local ecological context.

Fact: all evolution occurs, and has occurred, within a molecular, ecological and/or social network, context or environment. (Challenge: name one biological, psychological or social phenomenon or entity which is not a network or the result of biological network process on one or more length scales.)*

If networks are the fundamental biological unit, they all must share ways of changing (they share a common set of dynamics).* Elsewhere I have proposed six types of dynamics to which all persisting biological networks are subject (there might be others!) and which, in turn, likely produce (most of) the complex phenomena evident in biological process and systems.*

As Professor Greenspan observes, nature is malleable (and, paradoxically, also constant) and we yet evolve (contrary to the dogmatic cornerstone of the evolutionary psychology cult). Immune processes proceed in clearly ecological patterns as do molecular processes in the cell (again, on many length and population-number scales). Too, species consist of similar organisms individually responding to their environment in a physiologically historical context, the molecular dynamics of "homozygous twins" are neither alike nor are the fine-scale molecular residues/substrates of that activity, the genes, exactly alike. Network (species) members (individuals) have to be different in order to provide a complementary function that contributes distinct utility to their network. We each perform distinct roles in our networks of family (several roles!), profession, social group, etc. Competition arises when two individuals' functions are similar.

(I'm responding here to comments made here.) Gehrman rightly observes that "Darwin is underappreciated". True, but part of the reason is that our view of evolution remains incomplete. Notice, as examples, that we have no theory of life -- let alone a definition of the term -- or even a worthy candidate for a unified theory of the life sciences, how molecules --> (have come to make) bigotry, sexual attraction, human economies, universities, authoritarian regimes, etc. Although inchoate, it is clear to many that merely pontificating "genes" or the "survival of the fittest _organism_" fails as an explanation. In my own experience, most reviews of my papers on this topic reveal the reviewers' poor scholarship, particularly on ecological topics (which in my view are the most complex of all biological topics, bewildering and fraught with nuance!). People preferentially absorb, and like to use, simple explanations and buzz words which, even if inaccurate, serve to reassure the speaker that others might infer that they know the topic cold (they are "fit" members of a social network); in truth, NO ONE grasps evolution broadly, and certainly not those who proclaim glibly on those topics.

Andresen bolsters the network view: his parents' fitness acrues in the (social, civilization advancing) network and its likely increased ability to persist under unexpected environmental conditions, although they themselves laudably reproduced relatively less.

Darwin clearly had an inkling of these dynamical relationships and crucial interactions in life's processes. However, he did not posess, and could not access our broadly accumulated and painstakingly refined view of the most complex parts of our universe (much of which can be browsed and sampled from the vantage of an Internet console). Still, without a context of understanding, most such accumulata serves as little more than an awesome collection to the easily impressed (rather than knowledge). We're still at the beginning.

*D. Hollenberg "On the evolution and dynamics of biological networks" _Biology Forum/Revista di Biologia_ 100:1 pp. 93-118 (2007).



Darwin is hugely underappreciated
by Paul Gehrman

[Comment posted 2008-05-09 16:26:18]
There's no doubt that the implcations of Darwinian theory are still being worked given that the paradigm affects the understanding of every aspect of life. I don't think it's hyperbole to state that Darwin's ideas remain the greatest single set of ideas in recorded human history. It's a shame that most people aren't more exposed to these ideas, which seems to be fault of the culture not fully embracing them.



Are humans evolving?
by Bradley Andresen

[Comment posted 2008-05-09 13:53:56]
Clearly, as stated in the article, humans are evolving. However, have we altered the classical definition of evolution and fitness? In our society the fittest individuals are, on average, those with less education and in the lower economic strata. Those with low fitness are generally professionals, which includes most of the readers of this column. Additionally, we have managed to bypass much of the natural selection process through medical technology, which arguably is applied more to the ?unfit? group. Thus evolution, the science of change, can be seen in humans, but is the cause truly biological natural selection, or is it sociological and thus cultural?

Let me use my own story as an example. My parents are professionals and I am an only child with no children of my own; consequently we are not fit. My mother?s water broke long before contractions started, thus she went through induced labor. If this were to happen 60,000 years ago I would have died, and my mother would most likely also die from infection. Although my parents? fitness is low, it is not zero as would be the case 60,000 years ago. This is a simple example, but many other situations are similar: pediatrics departments around the world can tell you the number of children that have been saved and gone on to reproduce; type I diabetes is a perfect example in and of itself.

To conclude, yes humans change (evolve), but is this through a biological natural selection or something more complex?



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